Not knowing the area, I expected at first that the fish in question were killifish, some of which are famous for appearing in a small ponds, often temporary ponds that dry up annually. However, I checked and your Alpine ponds and streams in Kosciusko, not all of which contain fish, do collectively contain a surprising variety of species, some of them in surprising places. They include several species of Galaxias and a job lot of others, including at least two species of eels. The situation, already complex, is further complicated by the fact that some of the ponds are joined by streams when there is sufficient rainfall, which in Australia, I understand, is not everywhere every year.
Now, such small fish have a habit of appearing in surprising places. Sometimes it turns out that there has been human assistance. Sometimes it seems that birds and similar creatures have played various roles, according to the local circumstances. How often this is because some fortunate ancestor, or its eggs, got caught up in weeds entangled with the toes of an obliging bird, or because a passing tornado or fortuitous waterspout did a quick removal, no one can say. However, at least some of the Kosciusko fishes have been resident there for long enough to have formed distinct species. It seems that some of them at least can ascend, or even climb remarkably fast, steep streams. In fact that is how some of them seem to have survived the various trout thoughtlessly imported.
Good luck to those fish, say I. Some marvellous creatures have been exterminated by so-called angling fish released by persons who not only know no better, but do not want to know any better.