Ignoring the many pathological conditions that could cause such
symptoms, such discomfort is common both before one achieves proper
fitness, or in unfamiliar conditions such as excessive dust or unusually
dry or cold air.
Pumping cold air over the mucous membrane of the pharynx,
trachea, and bronchi - during a run in bracing weather, say - may well
cause irritation. If the condition is benign then, as one becomes
fitter, part of the bodily adaptation to the exercise is to adjust the
rate at which your respiratory epithelium secretes mucus in reaction to
irritation and to prevent drying out. Either too much or too little
mucus can be harmful. In due course your respiratory tract becomes less
sensitive to cold air.
The pain in the thorax and abdomen may also be partially
caused by respiratory muscle cramps, or painful stretching of some
connective and lung tissue.
As one becomes fitter, part of the adaptation is to
reduce the amount of air required for a given level of exertion by
relaxing the upper respiratory tract, increasing haemoglobin levels in the blood, improving the supply of oxygen and reducing over-breathing.
Jon Richfield, Somerset West, South Africa